/*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Nextflow config file for running minimal tests
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Defines input files and everything required to run a fast and simple pipeline test.

    Use as follows:
        nextflow run nf-core/proteinfamilies -profile test_merge,<docker/singularity> --outdir <OUTDIR>

----------------------------------------------------------------------------------------
*/

process {
    resourceLimits = [
        cpus: 4,
        memory: '15.GB',
        time: '1.h'
    ]
}

params {
    config_profile_name        = 'Test profile'
    config_profile_description = 'Test dataset to check generic pipeline function for creating new families'

    // Input data
    input                          = params.pipelines_testdata_base_path + 'samplesheets/samplesheet.csv'
    // Clustering
    clustering_tool                = 'linclust'
    cluster_seq_identity           = 0.5
    cluster_coverage               = 0.9
    cluster_size_threshold         = 5
    // Redundancy
    skip_family_redundancy_removal = true
    skip_family_merging            = false
}
