{
    "name": "nf-core/proteinfamilies",
    "homePage": "https://github.com/nf-core/proteinfamilies",
    "repos": {
        "https://github.com/nf-core/modules.git": {
            "modules": {
                "nf-core": {
                    "clipkit": {
                        "branch": "master",
                        "git_sha": "5a0f7c1d0ed924eb6ec939bd92ace755905c2014",
                        "installed_by": ["modules"]
                    },
                    "famsa/align": {
                        "branch": "master",
                        "git_sha": "5c07517e7b526d4c3058fa88009e765b130ea5e8",
                        "installed_by": ["modules"]
                    },
                    "find/concatenate": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "hhsuite/reformat": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "hmmer/hmmalign": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "hmmer/hmmbuild": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "hmmer/hmmsearch": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "mafft/align": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["modules"]
                    },
                    "mmseqs/cluster": {
                        "branch": "master",
                        "git_sha": "38697a933bef7041bb935c9b8374d9948ce6c794",
                        "installed_by": ["mmseqs_fasta_cluster"],
                        "patch": "modules/nf-core/mmseqs/cluster/mmseqs-cluster.diff"
                    },
                    "mmseqs/createdb": {
                        "branch": "master",
                        "git_sha": "38697a933bef7041bb935c9b8374d9948ce6c794",
                        "installed_by": ["mmseqs_fasta_cluster"]
                    },
                    "mmseqs/createtsv": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["mmseqs_fasta_cluster"]
                    },
                    "mmseqs/linclust": {
                        "branch": "master",
                        "git_sha": "38697a933bef7041bb935c9b8374d9948ce6c794",
                        "installed_by": ["mmseqs_fasta_cluster"],
                        "patch": "modules/nf-core/mmseqs/linclust/mmseqs-linclust.diff"
                    },
                    "multiqc": {
                        "branch": "master",
                        "git_sha": "8deffd6a402233ebf905c66dbf804bd4c2637946",
                        "installed_by": ["modules"]
                    },
                    "seqfu/stats": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["faa_seqfu_seqkit"]
                    },
                    "seqkit/replace": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["faa_seqfu_seqkit"]
                    },
                    "seqkit/rmdup": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["faa_seqfu_seqkit"]
                    },
                    "seqkit/seq": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["faa_seqfu_seqkit"]
                    },
                    "untar": {
                        "branch": "master",
                        "git_sha": "00ee87ebb541af0008596400ce6d5f66d79d5408",
                        "installed_by": ["modules"]
                    }
                }
            },
            "subworkflows": {
                "nf-core": {
                    "faa_seqfu_seqkit": {
                        "branch": "master",
                        "git_sha": "15c0a7968179d3b717a9973a1c4f25beb8a9aa2b",
                        "installed_by": ["subworkflows"]
                    },
                    "mmseqs_fasta_cluster": {
                        "branch": "master",
                        "git_sha": "38697a933bef7041bb935c9b8374d9948ce6c794",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nextflow_pipeline": {
                        "branch": "master",
                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfcore_pipeline": {
                        "branch": "master",
                        "git_sha": "271e7fc14eb1320364416d996fb077421f3faed2",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfschema_plugin": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        }
    }
}
