/*
========================================================================================
    Nextflow config file for running minimal tests
========================================================================================
    Defines input files and everything required to run a fast and simple pipeline test.

    Use as follows:
        nextflow run nf-core/ampliseq -profile test_doubleprimers,<docker/singularity> --outdir <OUTDIR>

----------------------------------------------------------------------------------------
*/

process {
    resourceLimits = [
        cpus: 4,
        memory: '15.GB',
        time: '2.h'
    ]
}

params {
    config_profile_name = 'Test doubleprimers profile'
    config_profile_description = 'Minimal test dataset to check pipeline function when removing double primers'

    // Input data
    FW_primer = "NNNNCCTAHGGGRBGCAGCAG"
    RV_primer = "GACTACHVGGGTATCTAATCC"
    double_primer = true
    input = params.pipelines_testdata_base_path + "ampliseq/samplesheets/Samplesheet_double_primer.tsv"
    trunc_qmin = 30
    kraken2_ref_taxonomy = "greengenes"

    // skipping
    skip_fastqc = true
    skip_dada_taxonomy = true
}
