{
    "name": "nf-core/bacass",
    "homePage": "https://github.com/nf-core/bacass",
    "repos": {
        "https://github.com/nf-core/modules.git": {
            "modules": {
                "nf-core": {
                    "bakta/bakta": {
                        "branch": "master",
                        "git_sha": "9d0f89b445e1f5b2fb30476f4be9a8b519c07846",
                        "installed_by": ["modules"]
                    },
                    "bakta/baktadbdownload": {
                        "branch": "master",
                        "git_sha": "7c06e6820fa3918bc28a040e794f8a2b39fabadb",
                        "installed_by": ["modules"]
                    },
                    "busco/busco": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "canu": {
                        "branch": "master",
                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                        "installed_by": ["modules"]
                    },
                    "cat/fastq": {
                        "branch": "master",
                        "git_sha": "1ceaa8ba4d0fd886dbca0e545815d905b7407de7",
                        "installed_by": ["modules"]
                    },
                    "dragonflye": {
                        "branch": "master",
                        "git_sha": "ccfd6f5c2e6a24f50c7713e9a5ab887056ec9416",
                        "installed_by": ["modules"]
                    },
                    "fastp": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["fastq_trim_fastp_fastqc", "modules"]
                    },
                    "fastqc": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["fastq_trim_fastp_fastqc"]
                    },
                    "filtlong": {
                        "branch": "master",
                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
                        "installed_by": ["modules"]
                    },
                    "gunzip": {
                        "branch": "master",
                        "git_sha": "3a5fef109d113b4997c9822198664ca5f2716208",
                        "installed_by": ["modules"]
                    },
                    "kraken2/kraken2": {
                        "branch": "master",
                        "git_sha": "653218e79ffa76fde20319e9062f8b8da5cf7555",
                        "installed_by": ["modules"]
                    },
                    "liftoff": {
                        "branch": "master",
                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
                        "installed_by": ["modules"]
                    },
                    "miniasm": {
                        "branch": "master",
                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                        "installed_by": ["modules"]
                    },
                    "minimap2/align": {
                        "branch": "master",
                        "git_sha": "2c2d1cf80866dbd6dd0ea5d61ddd59533a72d41e",
                        "installed_by": ["modules"]
                    },
                    "multiqc": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "nanoplot": {
                        "branch": "master",
                        "git_sha": "9322f997f94451510f974e417ec5277869030b44",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/nanoplot/nanoplot.diff"
                    },
                    "porechop/porechop": {
                        "branch": "master",
                        "git_sha": "1d68c7f248d1a480c5959548a9234602b771199e",
                        "installed_by": ["modules"]
                    },
                    "prokka": {
                        "branch": "master",
                        "git_sha": "49ebda931c36c2b282f7958d00e1236b751f1031",
                        "installed_by": ["modules"]
                    },
                    "quast": {
                        "branch": "master",
                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                        "installed_by": ["modules"]
                    },
                    "racon": {
                        "branch": "master",
                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
                        "installed_by": ["modules"]
                    },
                    "samtools/index": {
                        "branch": "master",
                        "git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
                        "installed_by": ["modules"]
                    },
                    "samtools/sort": {
                        "branch": "master",
                        "git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
                        "installed_by": ["modules"]
                    },
                    "toulligqc": {
                        "branch": "master",
                        "git_sha": "f1ac3c70ce013f9b48ad2cf3a6e0f551a49c7d01",
                        "installed_by": ["modules"]
                    },
                    "unicycler": {
                        "branch": "master",
                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                        "installed_by": ["modules"]
                    },
                    "untar": {
                        "branch": "master",
                        "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
                        "installed_by": ["modules"]
                    }
                }
            },
            "subworkflows": {
                "nf-core": {
                    "fastq_trim_fastp_fastqc": {
                        "branch": "master",
                        "git_sha": "c2f0680e61bf5311cb199eab17427558d3549688",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nextflow_pipeline": {
                        "branch": "master",
                        "git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfcore_pipeline": {
                        "branch": "master",
                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfschema_plugin": {
                        "branch": "master",
                        "git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        }
    }
}
