# You can use this file to create a conda environment for this pipeline:
#   conda env create -f environment.yml
name: nfcore-methylseq-1.0
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  # bismark
  - conda-forge::openjdk=8.0.144 # Needed for FastQC - conda build hangs without this
  - fastqc=0.11.7
  - trim-galore=0.4.5
  - samtools=1.8
  - bowtie2=2.3.4.1
  - bismark=0.19.0
  - qualimap=2.2.2a
  - multiqc=1.5
  # bwa-meth aligner
  - picard=2.18.2
  - bwameth=0.2.0
  - methyldackel=0.3.0
