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MultiQC21
SAMtools16
fastp11
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Bowtie 27
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lofreq6
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compleasm5
ggplot25
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snpEff5
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GenomeScope 2.04
kraken24
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taxonomy_krona_chart3
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anndata2
biomformat2
bx-python2
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purge_dups2
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xcms2
ABRicate1
ampvis1
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Bwa-mem21
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Clair31
Clustal 2 (Clustal W, Clustal X)1
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DESeq21
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eggNOG-mapper v21
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msConvert1
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Metagenomics10
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illumina4
microbiome4
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openms4
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covid19.galaxyproject.org3
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cancer2
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demultiplexing2
differential-expression2
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fasta2
GATK42
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nanopore-sequencing2
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pacbio2
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proteogenomics2
quality2
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shotgun2
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structural-variants2
taxonomy-assignment2
training2
transcriptome2
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#single-cell1
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airr1
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amp1
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antimicrobial resistance1
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clip1
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covid191
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ctat1
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deseq21
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kmer-counting1
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kraken21
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landsat1
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limma1
linked-reads1
long-read1
low-pass-sequencing1
machine-learning1
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MARS-seq1
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Metabolomics1
metagenomes1
metagenomic-profiling1
metatranscriptomics1
methyl-seq1
mhc1
mhc-binding-prediction1
microarray1
minimal-example1
mnase-seq1
molecular-pixelation1
molecularcartography1
mpxv1
ms11
ms21
Multi-omics1
MultiQC1
name:amplicon1
name:single-cell1
nanostring1
nanostringnorm1
nascent1
natural-products1
nucleosome1
nucleosome-maps1
nucleosome-positioning1
optitype1
oxford-nanopore1
pairwise-alignment1
panel1
pangenome1
pathogen1
pathogen-genomics1
pbat1
peptides1
personalized-medicine1
phasing1
phylogenetic-placement1
phylogenetics1
phylogeny1
pixelator1
pixelgen-technologies1
population-genetics1
pox1
pre-processing1
pro-seq1
prokaryotes1
protein-databases1
protein-families1
protein-fold-prediction1
protein-folding1
protein-sequences1
protein-structure1
proteins1
puretarget1
pypgatk1
QC1
qiime21
quantseq1
randomization-tests1
rare-disease1
readmapping1
reads-interleaving1
recovery-tool1
repseq1
Reviewed1
rna-rbp-interactions1
robustness-assessment1
rrbs1
rrna1
SAMTools1
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screening1
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secondary-metabolites1
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sequence-classification1
shiny1
short-reads1
single-cell-omics1
single-cell-rna-seq1
slamseq1
small-rna1
smrna-seq1
snv1
Somatic1
spatial1
spectral-unmixing1
splicing1
sra1
Supernova1
synapse1
synteny1
tama1
target-panels1
targeted1
taxonomies1
tidyverse1
tmt1
transcription1
transcriptional-dynamics1
tree1
trend-analysis1
trends1
trimming1
tss1
Tutorial1
ultra1
umi1
umis1
unique-molecular-identifier1
unpaired-reads1
variant-annotation1
vgp1
viral1
viral-integration1
viral-metagenomics1
virus-genomes1
viruses1
virusintegrationfinder1
well-formed1
wes1
whole-exome-sequencing1
whole-genome-alignment1
whole-genome-sequencing1
wigits1
worflow1
wts1
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Submitter
WorkflowHub Bot178
Space
nf-core86
Creator
Paul Zierep6
Wolfgang Maier3
Peter van Heusden1
Pavankumar Videm1
Wolfgang Maier1
Anthony Bretaudeau1
Delphine Lariviere1
Anton Nekrutenko1
Bérénice Batut1
Romane Libouban1
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178
Workflows visible to you, out of a total of 178
Type: Nextflow
Creators: No author provided, Hadrien Gourlé, Daniel Straub, Sabrina Krakau
Submitter: WorkflowHub Bot
This workflow is composed with the XCMS tool R package (Smith, C.A. 2006) able to extract and the metaMS R package (Wehrens, R 2014) for the field of untargeted metabolomics.
Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury. Part of the VGP pipeline.
This workflow constructs Metagenome-Assembled Genomes (MAGs) using SPAdes or MEGAHIT as assemblers, followed by binning with four different tools and refinement using Binette. The resulting MAGs are dereplicated across the entire input sample set, then annotated and evaluated for quality. You can provide pooled reads (for co-assembly/binning), individual read sets, or a combination of both. The input samples must consist of the original reads, which are used for abundance estimation. In all cases, ...
Type: Galaxy
Creators: Bérénice Batut, Paul Zierep, Mina Hojat Ansari, Patrick Bühler, Santino Faack
Submitter: WorkflowHub Bot
This workflow can be used to assign multi-element molecular formulas to ultrahigh resolution mass spectra.
