Workflows

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1195 Workflows visible to you, out of a total of 1276
ATel Follow-up Photometric data Legacy Survey Photo-z
Work-in-progress
No description specified

Type: Galaxy

Creators: None

Submitter: Andrei Variu

Assembly of metagenomic sequencing data

Assembly of metagenomic sequencing data

Associated Tutorial

This workflows is part of the tutorial Assembly of metagenomic sequencing data, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

DeepAnnotation

DeepAnnotation can be used to perform genomic selection (GS), which is a promising breeding strategy for agricultural breeding. DeepAnnotation predicts phenotypes from comprehensive multi-omics functional annotations with interpretable deep learning framework. The effectiveness of DeepAnnotation has been demonstrated in predicting three pork production traits (lean meat percentage at 100 kg [LMP], loin muscle depth at 100 kg [LMD], back fat thickness at 100 kg [BF]) on a population of 1940 Duroc ...

Type: Python

Creators: Wenlong Ma, Weigang Zheng, Shenghua Qin, Chao Wang, Bowen Lei, Yuwen Liu

Submitter: Ma Wenlong

DOI: 10.48546/workflowhub.workflow.1732.1

Open RGB Imaging Workflow for Morphological and Morphometric Analysis
Stable

High-throughput phenotyping is addressing the current bottleneck in phenotyping within breeding programs. Imaging tools are becoming the primary resource for improving the efficiency of phenotyping processes and providing large datasets for genomic selection approaches. The advent of AI brings new advantages by enhancing phenotyping methods using imaging, making them more accessible to breeding programs. In this context, we have developed an open Python workflow for analyzing morphology, colour ...

Type: Python

Creators: Jorge Mas-Gómez, Pedro Martínez-García

Submitter: Jorge Mas Gomez

DOI: 10.48546/workflowhub.workflow.1731.1

Voronoi segmentation for Astronomy on Legacy Survey data
Work-in-progress

Modified workflow to perform Voronoi segmentation, based on https://usegalaxy.eu/published/workflow?id=23030421cd9fcfb2.

Input requirements:

  • RA: -- right ascension in degrees as a float number.
  • Dec: -- Declination in degrees as a float number
  • Radius: -- the radius of the cone to be queried in arcminutes as a float number
  • Pixel size: -- the size of the pixel in arcseconds
  • Band: -- the band (channel) of the image: g, r, z, i

Type: Galaxy

Creators: Andrei Variu, Riccardo Massei, Even Moa Myklebust

Submitter: Andrei Variu

AmpSeeker

Snakemake GitHub release License

Documentation: https://sanjaynagi.github.io/AmpSeeker/ ...

Type: Snakemake

Creators: None

Submitter: Sanjay Nagi

DTC-V1 volcanic unrest
Work-in-progress

CWL + RO-Crate Workflow Descriptions

This repository stores computational workflows described using the Common Workflow Language (CWL) and enriched with metadata using Research Object Crate (RO-Crate) conforming to the Workflow Run RO-Crate profile.

Each workflow is contained in its own directory (e.g., WF5201, WF6101, ...). Inside each workflow directory you will typically find at least:

  • The CWL workflow definition (with the same name as the directory, e.g., WF5201.cwl). ...

Type: Common Workflow Language

Creators: None

Submitter: Rebecca Bruni

High-precision machine learning identifies a reproducible functional connectivity signature of autism spectrum diagnosis in a subset of individuals

Code for the high risk autism phenotype paper

MIT license

This repository implements a fully reproducible pipeline for the autism signature project. It uses invoke tasks and a Docker container for consistent, cross-platform execution.

The entire workflow—data fetching, processing, and figure generation—can be reproduced in a few commands. Much of the code in this repo originated from [ASD ...

Type: R markdown

Creators: Natasha Clarke, Lune Bellec

Submitter: Natasha Clarke

DOI: 10.48546/workflowhub.workflow.1336.1

nf-core/scnanoseq

GitHub Actions CI Status GitHub Actions Linting StatusAWS CI[![Cite ...

Type: Nextflow

Creators: Austyn Trull, Lara Ianov

Submitter: WorkflowHub Bot

nf-core/rnaseq
Stable

GitHub Actions CI Status GitHub Actions Linting StatusAWS CI[![Cite with ...

Type: Nextflow

Creators: Harshil Patel, Phil Ewels, Rickard Hammarén

Submitter: WorkflowHub Bot

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