Workflows
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Tool
MultiQC30
SAMtools24
fastp22
BWA19
Minimap214
BUSCO13
Bowtie 212
Cutadapt12
FastQC11
BEDTools10
BCFtools9
BLAST9
MaBoSS7
Merqury7
PhysiCell7
SRA Software Toolkit7
Bandage6
gfastats6
lofreq6
MACS6
Bwa-mem25
kraken25
QUAST5
R5
SCANPY5
shovill5
snpEff5
Stacks5
TransDecoder5
antiSMASH4
Cufflinks4
Galaxy4
purge_dups4
QualiMap4
Racon4
RepeatMasker4
seqtk4
Seurat4
STAR4
StringTie4
taxonomy_krona_chart4
Unicycler4
UniProt4
cisTEM3
GenomeScope 2.03
gffread3
Gromacs3
HISAT23
iVar3
MotionCor23
Open Babel3
picard_samtofastq3
Scipion3
SPAdes3
Trimmomatic3
Vcflib3
Variant Effect Predictor (VEP)3
AmberTools2
Biopython2
BRAKER12
bx-python2
CellProfiler2
ChiRA2
DESeq22
FASTX-Toolkit2
Flye2
FreeBayes2
funannotate2
GATK2
ggplot22
Infernal2
Medaka2
NanoPlot2
nanopolish2
NGSUtils2
PredPrIn2
PretextView2
RDKit2
RepeatModeler2
SnpSift2
tophat22
VADR2
vardict2
VarScan2
vcfanno2
vcfutils2
VSEARCH2
XMIPP2
AdapterRemoval1
AnnotSV1
BBMap1
Bioconductor1
CARNIVAL1
cBioPortal1
ChemicalToolbox1
Clustal 1.8 (Clustal W, Clustal X)1
clusterProfiler1
CNVkit1
COMBAT-TB Workbench1
compute_sequence_length1
cuffdiff1
decoupleR1
Delly21
EGA1
Filtlong1
FLASH1
GBMatch - GBMPredictor1
GEMINI1
HiFiAdapterFilt1
htseqcount1
HTSlib1
iqtree1
JBrowse 21
MAPseq1
Matchms1
miniasm1
miniprot1
MOB-suite1
Metagenomic operational taxonomic units (mOTUs)1
MSMetaEnhancer1
MUMmer1
Nextflow1
nextstrain.org1
ngsReports1
OBITools1
PEAR1
PhysiBoSS1
pilon1
PLINK1
progeny1
Proteinortho1
protexcluder1
pyfastaq1
recetox-msfinder1
RepeatModeler1
SeqCode1
SeqSero21
SISTR1
Snakemake1
snippy1
Subread1
SuCOS1
tabix1
tb-profiler1
ToolDistillator1
Trim Galore1
UCSC Genome Browser Utilities1
varlociraptor1
WGCNA1
YaHS1
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Workflow type
Galaxy245
Nextflow123
Common Workflow Language69
COMPSs45
Snakemake38
Python33
Jupyter28
Docker15
Shell Script13
Workflow Description Language8
KNIME6
Bpipe5
Scipion5
R markdown3
Autosubmit1
Janis1
Perl1
Pi1
Quarto Markdown1
Rbbt1
Uniform Interface to Computing Resources1
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Tag
covid-1949
Bioinformatics44
Genomics34
Metagenomics29
Assembly27
Nextflow23
Transcriptomics21
CWL18
PyCOMPSs18
rna18
rna-seq18
SNPs17
Alignment16
Annotation16
Galaxy15
workflow15
INDELs14
GATK413
RNASEQ13
variant calling13
illumina12
variant_calling12
vgp12
ERGA11
Marenostrum IV11
nanopore11
Python11
cancer10
Example10
image processing10
Proteomics10
Supercomputer10
Tutorial10
imaging9
Large-genome-assembly9
Machine Learning9
ONT9
Workflows9
COMPSs8
covid19.galaxyproject.org8
dislib8
HiFi8
SARS-CoV-28
scRNAseq8
Metabolomics7
scalable7
Snakemake7
TSI-annotation7
WGS7
Climate6
DNA6
FASTQ6
molecular dynamics6
PBS6
Reviewed6
Virology6
Virus6
ARTIC5
bpipe5
ChIP5
genome-annotation5
groovy5
GTN5
Hi-C5
Java5
Laptop5
mapping5
NCI5
pediatric5
phylogenetics5
SAMTools5
single-cell5
variant-calling5
VGP_curated5
astronomy4
binning4
BY-COVID4
ChIP-seq4
Classification4
copernicus4
FAIR workflows4
Gadi4
generic4
genome_assembly4
Germline4
gpu4
helicase4
HPC4
jupyter4
mass-spectrometry4
microbiome4
name:ASSEMBLY+QC4
name:ONT4
NGS4
openms4
QC4
rare diseases4
Retrosynthesis4
rna virus4
shotgun4
10x-genomics3
10xgenomics3
16S3
Amplicon3
antimicrobial resistance3
Assembly+QC3
ATAC-seq3
BWA3
BWA-mem3
Cheminformatics3
Conversion3
cryoem3
DataQC3
Default-SDR3
Ecology3
eDNA3
EOSC4Cancer3
Epigenomics3
FastQC3
genome3
hifiasm3
identification3
image-processing3
kallisto3
kraken3
manta3
Metabarcoding3
MetaDEGalaxy3
metatranscriptomics3
mirna prediction3
Multi-omics3
MultiQC3
name:ILLUMINA3
NCI-Gadi3
OME-Zarr3
Pathway Analysis3
pathway prediction3
protein3
S33
SANBI3
scipion3
scRNA-seq3
Somatic3
spa3
STAR3
structural variants3
taxonomic-classification3
taxonomic-profiling3
18S2
adna2
Alternative splicing2
alternative-splicing2
AMR2
annotsv2
bash2
bioimaging2
blast2
BROAD2
BUSCO2
CellProfiler2
Cellranger2
CODEX22
collections2
coronavirus2
cosifer2
Deep learning2
demultiplexing2
dengue2
denovo-assembly2
DE_NOVO2
differential expression2
differential-expression2
DNA-seq2
Electron microscopy2
ExomeDepth2
exploration2
expression2
Flashlite2
GC-MS2
gene set enrichment analysis2
Genome assembly2
genome-assembly2
GROMACS2
GWAS2
HiC2
HySEA2
ITS2
iwc2
linkage_map2
long-read-sequencing2
long-reads2
MARS-seq2
Matrix Multiplication2
Merqury2
MERS2
Meryl2
metabolic engineering2
microscopy2
mpxv2
MS2
multi-specimen-input2
name:ERGA2
nanopore-sequencing2
NSP132
pangenome2
pathogen2
pathway design2
peak-calling2
personalized medicine2
phylogenomics2
Pipeline2
Profiling2
proteogenomics2
quantification2
Quast2
Segmentation2
Semantic Network Analysis2
singularity2
snv2
spatial2
star-solo2
Supernova2
Synthetic Biology2
Tophat22
TransBioNet2
transcriptome2
trinity2
Tsunami2
validated-2022-06-292
variant-analysis2
variation2
VARSCAN22
VCF2
WDL2
wes2
west nile2
whole genome sequencing2
workflow4metabolomics2
zika2
#single-cell1
10.3390/microorganisms100202921
10X1
ABR1
abricate1
air-quality1
airr1
alevin1
alphafold21
amp1
amplicon-sequencing1
ampliconarchitect1
ampliconsuite1
AMR-detection1
ancient-dna1
ancient-dna-analysis1
ancientdna1
antibiotic-resistance1
antimicrobial-peptides1
antimicrobial-resistance-genes1
arg1
atac1
ATACseq1
automated workflows1
b-cell1
BackTrackBB1
bacteria1
bacterial1
bacterial-genome-analysis1
bacterial-genomes1
bacterial-genomics1
BAM1
bamtofastq1
bases2fastq1
BBduk1
bbmap1
bcl2fastq1
Behavioral data1
benchmarking1
bgc1
BGE1
BioBB1
Biodiversity1
bioformats1
bioformats2raw1
Bioimage1
Biomedical Ontologies1
BioStudies1
biosynthetic-gene-clusters1
bisulfite-sequencing1
Bootstrapping1
bowtie21
BQSR1
braken1
bustools1
bwa-mem21
C++1
cage1
cage-seq1
cageseq-data1
carveme1
CATH1
causal inference1
chimeric-alignment1
chromatin-accessibiity1
chromatin-immunoprecipitation1
chromosome-conformation-capture1
CIRCexplorer21
circle-seq1
circrna1
circRNA_finder1
circular1
CIRIquant1
clip1
clip-seq1
cmip61
CNVkit1
common data model1
community-detection1
Community_metrics1
comparative effectiveness1
Compomics1
Consensus1
container1
contigs1
coprolite1
Copy Number Variation1
cosmic1
counts1
covid191
cramtofastq1
crispr1
crispr-analysis1
crispr-cas1
ctat1
cutandrun1
cutandrun-seq1
cutandtag1
cutandtag-seq1
CUTnRUN1
cytometry1
Darwin core1
data annotation1
data fusion1
data integration1
Data package1
data retrieval and transformation1
data transformation1
data wrangling1
data-independent-proteomics1
Databases1
DataOne1
DCC1
ddbj1
DE1
de novo1
de-identification1
decontamination1
deep-variant1
denovo1
deseq21
dia1
dia-proteomics1
diagnostics1
DIAMOND1
differential-abundance1
differential_expression1
directed acyclic graph1
disease outcome prediction1
DL1
dna barcoding1
dna-methylation1
Domain-Domain interaction1
download1
dRNAseq1
dualrna-seq1
durg response simulation1
earth observation1
Earthquake Detection1
eccdna1
ecdna1
Ecological metadata language1
eFlows4HPC1
EGA-archive1
elementbiosciences1
em-seq1
emergen_validated1
EML1
eml-annotation1
ena1
eosc-nordic1
epigenome1
epitope1
epitope-prediction1
eukaryotes1
evolution1
evolutionary-tree1
Exposomics1
extrachromosomal-circular-dna1
EZyRB1
facs-sorting1
FAIR1
fastp1
featurecounts1
file conversion1
filter1
filtering1
find_circ1
fish1
function1
fusion1
fusion-genes1
Galaxy-E1
GATK1
GATK31
GEM1
gene expression correlation1
gene expression data wrangling1
Gene ontology term sets similarity1
Gene Prioritization1
gene-expression1
gene-fusion1
genetic design1
genomic ancestry1
genomics-visualization1
geo1
geo database mining1
ggbio1
Glacios1
GLM1
global assemblies1
gnomad1
gnps1
google1
Gravitational Waves1
GRIDS1
GRIDSS1
gro-seq1
gsea1
GUCFG2galaxy1
GUI1
HaplotyeCaller1
hCNV1
hicar1
high-throughput1
high-throughput_sequencing_analysis1
hla1
hla-typing1
hmdb1
horizontal-gene-transfer1
host-pathogen1
host-pathogen PPIs1
HTSeq1
human1
humann21
Hybrid Workflow1
hybrid-assembly1
image file format1
image-analysis1
image-segmentation1
imageJ1
immcantation1
immunology1
immunorepertoire1
index1
international comparison1
iontorrent1
isoform switching1
isoseq1
isoseq-31
Juicer1
k-mer1
kmeans1
kmer1
kmer-counting1
kmer-frequency-count1
Knime1
kraken21
Kratos Multiphysics1
krona1
label-free-quantification1
LC-MS1
lfq1
LiftOver1
limma1
linked-reads1
Luigi & Rufus workflow1
macs21
MAG1
Magic1
map1
MapSplice1
mass-spec1
massbank1
MaxQuant1
memote1
metagenome1
metagenomes1
metaMS1
methyl-seq1
MGE1
mhc1
mhc-binding-prediction1
microarray1
microbial1
MIRACUM1
miRanda1
mlxv1
mnase-seq1
Mobilome1
model1
Modeling1
molecular-pixelation1
molecularcartography1
mpvx1
ms11
ms21
Multivariate1
Mutect21
name:amplicon1
name:PROFILING1
name:single-cell1
nanostring1
nanostringnorm1
nascent1
natural-products1
ncbi sra1
NCI Gadi1
ndvi1
networks1
NGFF1
non-coding1
non-model1
Non-parametric1
nonspliced1
Nord 31
NS31
nucleosome1
nucleosome-maps1
nucleosome-positioning1
observation1
OME-TIFF1
openebench1
optitype1
oxford-nanopore1
pacbio1
paired-end1
pangeo1
parallel1
Parsl1
pathogen-genomics1
pathogenicity score1
Pathology1
Pathway co-occurrence1
pbat1
peptides1
Perl1
Permeability1
personalized-medicine1
Pfam1
phylogenetic-placement1
phylogeny1
pixelator1
pixelgen-technologies1
pod51
polygenic risk score1
polygenic score1
population-genetics1
pox1
pre-processing1
prediction1
Presence_absence1
pro-seq1
prokaryotes1
prokka1
Proline1
Protein domains1
protein interactin data triplification1
protein interactions database integration1
protein-databases1
protein-fold-prediction1
protein-folding1
Protein-Protein Interaction1
Protein-Protein interaction prediction1
protein-sequences1
protein-structure1
proteins1
proteins network augmentation1
public cancer datasets exploration1
purge_dups1
pypgatk1
QCxMS1
qiime21
QTL mapping1
quality1
quality control1
quantseq1
radio interferometry1
rare-disease1
rdkit1
readmapping1
reads_selection1
reads_simulation1
Reconstruction1
Reduced Order Modeling1
referencegenome1
Regulatory Mendelian Mutation score1
RELIANCE1
ReMM1
Report1
repseq1
rice1
rna-rbp-interactions1
rrbs1
rrna1
RSeQC1
salmon1
sambamba1
scientific publication text mining1
screening1
secondary-metabolites1
Segemehl1
Seismic Detection1
Semantic Comparison1
Semantic Interpretation1
sentinel-2 data1
sequence annotation1
sequence search1
sequence-classification1
shiny1
short-reads1
SIM1
single particle analysis1
single-cell-omics1
single-cell-rna-seq1
single-end1
SKA1
slamseq1
small-rna1
smart-seq 21
smoove1
smrna-seq1
SPARK1
spatial-transcriptomics1
Species abundance1
spectra1
splicing1
sra1
st1
Statistics1
strandedness1
StringTie1
structural-variants1
survivor1
SV1
SVD1
synapse1
synthetic data1
TAD1
TalosArctica1
tama1
target-panels1
TargetScan1
taxonomies1
taxonomy-assignment1
tcga1
TELLSeq1
tiddit1
tidyverse1
TitanKrios1
tmt1
Tomography1
topologically associating domains1
Toxicology1
trajectories1
Trans-Proteomic1
transcription1
transcriptional-dynamics1
tree1
tss1
tuberculosis1
tumour1
ultra1
umi1
umis1
Unicycler1
unique-molecular-identifier1
urgent computing1
vaccines1
validaiton o protein interaction predictions1
variant1
variant pathogenicity prediction1
variant-annotation1
viral1
viral-integration1
viruses1
virusintegrationfinder1
visium1
whole-exome-sequencing1
whole-genome-sequencing1
worflow1
xcms1
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Submitter
WorkflowHub Bot120
Genís Bayarri70
Raül Sirvent24
Anna Syme23
Bert Droesbeke16
Laura Rodriguez-Navas14
Sarah Williams14
Diego De Panis12
Yvan Le Bras11
Ambarish Kumar10
Tracy Chew9
Cristóbal Gallardo9
Anne Fouilloux8
Bart Nijsse8
Jean-Marie Burel8
Miguel Vazquez8
Paul De Geest8
Douglas Lowe7
Georgina Samaha7
Cristian Tatu7
Yasmmin Martins7
Johan Gustafsson6
Jasper Koehorst5
Sergi Sayols5
Oliver Woolland5
Tom Brown5
Matthieu Muffato5
Melchior du Lac4
Martin Beracochea4
Willem de Koning4
Peter van Heusden4
johan Rollin4
Helena Rasche4
Dennis Dollée4
Konstantinos Kyritsis4
Bryan Raubenolt4
Stian Soiland-Reyes3
Irene Sánchez3
Juma Bayjan3
Mike Thang3
Wolfgang Maier3
Anton Nekrutenko3
Jeanette Reinshagen3
Varsha Kale3
Pablo Riesgo Ferreiro3
Daniel Marchan3
Oliver White3
Hervé Ménager2
Luca Pireddu2
Robin Long2
Beatriz Serrano-Solano2
Pavankumar Videm2
Ross Thorne2
Sarah Beecroft2
Valentine Murigneux2
Volodymyr Savchenko2
Johannes Köster2
thodk2
Elida Schneltzer2
Pasi Korhonen2
Miguel Roncoroni2
Kary Ocaña2
Cristiane Taniguti2
Peter Menzel2
Adam Tofilski2
Simon Rolph2
Tina Tian2
Daan Hazelaar2
Andrea Furlani2
Fabrice Touzain2
Jorge Ejarque2
Rutger Vos2
Nathaniel Matteson2
Fernando Vázquez-Novoa2
Ashish Bhawel2
Xiaolong Luo2
francois moreews1
Camille Juigné1
Laura del Cano1
Ivan Topolsky1
ignacio eguinoa1
Andrea Giachetti1
Michael R. Crusoe1
Matteo Chiara1
Carlos Oscar Sorzano Sanchez1
Paul Brack1
phytopat gembloux1
johan Rollin1
Marco De La Pierre1
Julian Uszkoreit1
Qinqin Long1
Dennis Hendriksen1
Daphne Wijnbergen1
Patrick Durand1
Cyril Noel1
Richard Lupat1
Javier Moldon1
Bianca Pasat1
Rob Edwards1
Valentin Tilloy1
Michael Roach1
Ryan Patterson-Cross1
Alexander Botzki1
Barry Digby1
panou@fleming.gr Panou1
Haris Zafeiropoulos1
Kaur Alasoo1
Hrishikesh Dhondge1
Marvin Martens1
Marlene Rezk1
Naga Kasinadhuni1
Casper de Visser1
Tim Booth1
Samuel Lambert1
Ekaterina Sakharova1
Alejandra Escobar1
Saskia Hiltemann1
bugra oezdemir1
Max Schubach1
Luc Cornet1
Felicita Gernhardt1
Nico Trummer1
Ang Guo1
Diego Garrido-Martín1
David James Sherman1
Roderic Guigó1
Bruno P. Kinoshita1
Luca Cozzuto1
Xiaokang Zhang1
Zavolan Lab1
Mahnoor Zulfiqar1
Stevie Pederson1
Jeffrey Detras1
Thomas Gruber1
Marjan Meurisse1
Vasiliki Panagi1
Khaled Jum'ah1
Jorrit Mesman1
Elisabetta Spinazzola1
Rosa M Badia1
Anand Maurya1
Agata Kilar1
Vincent Hervé1
Markus Konkol1
Jessica Gomez-Garrido1
Akshay Akshay1
Davide Gurnari1
David Yuan1
Daniel Clarke1
Justin Sonneck1
Yi Sun1
Damon-Lee Pointon1
Bram Danneels1
Zafran Hussain Shah1
Denys Savchenko1
Magdalena Antczak1
Kateřina Storchmannová1
Michael Hall1
Rafael Terra1
Ziad Al-Bkhetan1
Aishwarya Iyer1
Dominik Lux1
Archit Dabral1
Andrii Neronov1
Michael Lloyd1
Arnau Soler Costa1
Thomas Roetzer-Pejrimovsky1
Helge Hecht1
Wudmir Rojas1
Carlos Classen1
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Team
BioBB Building Blocks80
nf-core69
Intergalactic Workflow Commission (IWC)52
Australian BioCommons43
Galaxy Australia28
Workflows and Distributed Computing27
GalaxyProject SARS-CoV-221
QCIF Bioinformatics18
Sydney Informatics Hub16
ERGA Assembly16
usegalaxy-eu14
UNLOCK13
PNDB11
EuroScienceGateway11
COMPSs Tutorials11
Galaxy Training Network10
MGnify8
Galaxy Climate8
OME8
PerMedCoE8
IBISBA Workflows7
HoloFood at MGnify7
yPublish - Bioinfo tools7
CWL workflow SARS-CoV-26
Integrated and Urban Plant Pathology Laboratory6
IMBforge5
UX trial team5
iPC: individualizedPaediatricCure5
EJPRD WP13 case-studies workflows5
Specimen Data Refinery5
Cluster Emergent del Cervell Humà5
eFlows4HPC general5
Biodiversity Genomics Europe (general)5
NanoGalaxy4
Seq4AMR4
SANBI Pathogen Bioinformatics4
Biodata Analysis Group4
Tree of Life Genome Analysis4
Generalized Open-Source Workflows for Atomistic Molecular Dynamics Simulations of Viral Helicases4
SARS-CoV-2 Data Hubs3
ODA3
CO2MICS Lab3
EU-Openscreen3
TRON gGmbH3
Euro-BioImaging3
Scipion CNB3
NHM Clark group3
nf-core viralrecon2
V-Pipe2
EOSC-Life - Demonstrator 7: Rare Diseases2
Pawsey Supercomputing Research Centre2
SeBiMER2
Snakemake-Workflows2
Applied Computational Biology at IEG/HMGU2
INFRAFRONTIER workflows2
TransBioNet2
CRC Cohort2
Workflows Australia2
Medizinisches Proteom-Center, Medical Bioinformatics2
usegalaxy.be workflows2
Air Quality Prediction2
Read2Map2
ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression2
Apis-wings2
TRE-FX2
BioDT Use Case 4.1.1.2 Ecosystem services2
Workflows for geographic science2
Katdetectr2
ANSES-Ploufragan2
Pillar III: Urgent computing for natural hazards2
ERGA Annotation2
Tree of Life Genome Assembly2
CholGen2
BY-COVID (general)2
Peter Menzel's Team2
Genome Data Compression Team2
RECETOX SpecDatRI2
NMR Workflow1
COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource1
Italy-Covid-data-Portal1
EOSC-Life-WP6-Demos1
EOSC-Life WP31
MOLGENIS1
Janis1
IAA-CSIC1
FAME1
CHU Limoges - UF9481 Bioinformatique / CNR Herpesvirus1
HecatombDevelopment1
OpenEBench1
Bioinformatics and Biostatistics (BIO2 ) Core1
VIB Bioinformatics Core1
Single Cell Unit1
emo-bon1
CINECA1
Toxicology community1
Gyn Department1
AGRF BIO1
X-omics1
CAPSID1
Edinburgh Genomics1
KircherLab1
BCCM_ULC1
Computational Science at HZDR1
Big data in biomedicine1
MISTIC1
Guigó lab1
Statistical genetics1
Delineating Regions-of-interest for Mass Spectrometry Imaging by Multimodally Corroborated Spatial Segmentation1
Bioinformatics Unit @ CRG1
BSC-CES1
ELIXIR Proteomics1
Black Ochre Data Labs1
IRRI Bioinformatics Group1
Zavolan Lab1
Metabolomics-Reproducibility1
NGFF Tools1
Bioinformatics workflows for life science1
Helmholtz Scientific Project Workflow Platform1
BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection1
Lake Erken modelling setup1
EOSC-Life WP3 OC Team, cross RI project1
ARA-dev1
Mendel Centre for Plant Genomics and Proteomics1
Metagenomic tools1
Pillar I: Manufacturing1
Polygenic Score Catalog1
MLme: Machine Learning Made Easy1
Dioscuri TDA1
NIH CFDE Playbook Workflow Partnership1
MMV-Lab1
EMBL-CBA1
EBP-Nor1
Evaluation of Swin Transformer and knowledge transfer for denoising of super-resolution structured illumination microscopy data1
Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)1
Chemical Data Lab1
Pangenome database project1
HP2NET - Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment1
Building spatio-temporal workflows in Galaxy1
Jackson Laboratory NGS-Ops1
BRAIN - Biomedical Research on Adult Intracranial Neoplasms1
Institute for Human Genetics and Genomic Medicine Aachen1
EGA QC1
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Space
Independent Teams234
BioExcel80
Australian BioCommons70
nf-core69
eFlows4HPC39
COVID-19 Biohackathon31
ERGA18
ELIXIR13
Galaxy10
HoloFood7
Sanger Tree of Life6
DISSCo - Distributed System of Scientific Collections5
Biodiversity Genomics Europe (BGE)5
EOSC-Life3
ELIXIR Belgium2
BioDT2
GenomeDataCompression2
EIRENE-CZ2
EOSC-Life-WP61
BeYond-COVID (BY-COVID)1
JKU 1
IRRI-Bioinformatics1
HELIPORT1
Coupled Catchment Lake Modelling1
AquaINFRA1
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Creator
Adam Hospital76
Genís Bayarri75
Anna Syme23
Bart Nijsse13
Tracy Chew13
Jasper Koehorst12
Diego De Panis12
Yvan Le Bras10
Georgina Samaha10
Laura Rodriguez-Navas9
Rosemarie Sadsad9
Jean-Marie Burel8
Martin Beracochea7
Saskia Hiltemann7
Cristian Tatu7
Douglas Lowe6
José Mª Fernández6
Delphine Lariviere6
Javier Conejero6
Coline Royaux5
Sergi Sayols5
Melchior du Lac4
Friederike Ehrhart4
Gareth Price4
Oliver Woolland4
Cali Willet4
Jorge Ejarque4
Bryan Raubenolt4
Ambarish Kumar3
Juma Bayjan3
Ozan Ozisik3
Patrick Durand3
Laura Leroi3
Laurence Livermore3
Germán Royval3
Cristóbal Gallardo3
Cenna Doornbos3
Jeanette Reinshagen3
Ekaterina Sakharova3
Tom Brown3
Konstantinos Kyritsis3
Ivan Topolsky2
Luca Pireddu2
Anne Fouilloux2
Michael R. Crusoe2
Pavankumar Videm2
Julian Uszkoreit2
Valentine Murigneux2
Alexandre Cormier2
Cyril Noel2
Pierre Cuzin2
Mike Thang2
Volodymyr Savchenko2
Philipp Gormanns2
Kary Ocaña2
Raül Sirvent2
Varsha Kale2
Cristiane Taniguti2
Peter Menzel2
Diego Garrido-Martín2
Roderic Guigó2
Andrea Furlani2
Denys Savchenko2
Ziad Al-Bkhetan2
Helge Hecht2
Zargham Ahmad2
Stian Soiland-Reyes1
Camille Juigné1
Willem de Koning1
Pau Andrio1
Johan Gustafsson1
Matthias Haimel1
Carlos Oscar Sorzano Sanchez1
Paul Brack1
Sarah Beecroft1
Marco De La Pierre1
Helena Rasche1
Richard Lupat1
Johannes Köster1
Valentin Tilloy1
Michael Roach1
Elida Schneltzer1
Luiz Gadelha1
Asier Gonzalez-Uriarte1
Wolfgang Maier1
Woosub Shin1
Ryan Patterson-Cross1
Anthony Bretaudeau1
Barry Digby1
Haris Zafeiropoulos1
Hrishikesh Dhondge1
Kim Philipp Jablonski1
Pasi Korhonen1
Marvin Martens1
Tazro Inutano1
Marlene Rezk1
Casper de Visser1
Jasper Ouwerkerk1
Benjamin Wingfield1
Anna Niehues1
Marie-Dominique Devignes1
Tim Booth1
Samuel Lambert1
Alejandra Escobar1
Tatiana Gurbich1
Katherine Farquharson1
Lucas Cruz1
Pablo Riesgo Ferreiro1
Felicita Gernhardt1
Andrey Prjibelski1
Xiaokang Zhang1
Zavolan Lab1
Mahnoor Zulfiqar1
Stevie Pederson1
Veit Schwämmle1
Anton Korobeynikov1
Luiz Gadelha1
Vasiliki Panagi1
Jorrit Mesman1
Elisabetta Spinazzola1
Rosa M Badia1
Agata Kilar1
Jessica Gomez-Garrido1
Sagane Joye-Dind1
Akshay Akshay1
Phuong Doan1
Davide Gurnari1
David Yuan1
Justin Sonneck1
Damon-Lee Pointon1
William Eagles1
Zafran Hussain Shah1
Fernando Vázquez-Novoa1
Nandan Deshpande1
Michael Hall1
Rafael Terra1
Ian Brennan1
Aishwarya Iyer1
Dominik Lux1
Ashish Bhawel1
Andrii Neronov1
Amy Curwin1
Arnau Soler Costa1
Thomas Roetzer-Pejrimovsky1
Xiaolong Luo1
Elliott J. Price1
Wudmir Rojas1
Carlos Classen1
Jordi Rambla1
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Collection
BioCommons ‘Bring Your Own Data’ Expansion Project39
Interactive Jupyter Notebooks for FAIR and reproducible biomolecular simulation workflows17
Tutorials for BioExcel Building Blocks (BioBB)11
Workflows in EuroScienceGateway10
scRNAseq processing in galaxy8
COMPSs Workflows from 2024 Tutorial8
TSI annotation workflows7
Freely accessible ready to use global infrastructure and workflows for SARS-CoV-2 monitoring6
IDR6
ERGA Assembly Galaxy HiFi & HiC Pipelines (Hifiasm-HiC + Purge_Dups + YaHS)6
16S Microbial Analysis with mothur (on Galaxy Australia)6
ERGA Assembly Galaxy ONT+Illumina & HiC Pipelines (NextDenovo-HyPo + Purge_Dups + YaHS)6
ERGA Assembly Galaxy ONT+Illumina & HiC Pipelines (Flye-HyPo + Purge_Dups + YaHS)6
BioExcel Building Blocks (BioBB) Protein MD Setup Tutorials5
HiFi genome assembly on Galaxy4
Vertebrate Genomes Pipelines (VGP) workflows3
CEITEC CryoEM Facility Workflows3
BY-COVID related workflows3
ERGA Assembly Snakemake HiFi & HiC Pipelines3
TronFlow2
Sanger Tree of Life Assembly method1
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Topic annotations
Bioinformatics26
Whole genome sequencing23
Sequence assembly21
Genetic variation18
Transcriptomics15
Metagenomics11
Biomedical science10
Genomics10
Computer science9
Population genomics9
Biodiversity8
Ecology8
Gene expression8
Metagenomic sequencing5
Biological databases4
Compound libraries and screening4
Data mining4
Gene transcripts4
Oncology4
Sequence analysis4
Sequencing4
Bioimaging3
DNA mutation3
DNA polymorphism3
Drug discovery3
Imaging3
Machine learning3
Preclinical and clinical studies3
Protein interactions3
Sample collections3
Virology3
Workflows3
Copy number variation2
Data integration and warehousing2
Data quality management2
Data visualisation2
Exome sequencing2
Gene structure2
Genetics2
Microbiology2
Molecular interactions, pathways and networks2
Protein interaction experiment2
Proteomics2
Quantitative genetics2
Rare diseases2
Structural variation2
ChIP-seq1
Computational chemistry1
Data submission, annotation and curation1
DNA packaging1
Environmental science1
Epigenomics1
Human genetics1
Infectious disease1
Mapping1
Medical imaging1
Medical informatics1
Metabolomics1
Metatranscriptomics1
Microbial ecology1
Molecular genetics1
Ontology and terminology1
Pathology1
Phylogenetics1
Phylogenomics1
Physics1
Protein folds and structural domains1
Protein variants1
Public health and epidemiology1
Small molecules1
Structural genomics1
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Operation annotations
Sequencing quality control15
Genome assembly12
Variant calling12
Expression analysis7
Sequence assembly7
Variant filtering7
Sequence clustering6
Sequence alignment5
Taxonomic classification5
Annotation4
De-novo assembly4
Conversion3
Data retrieval3
Gene-set enrichment analysis3
Haplotype mapping3
Protein interaction network analysis3
Sequence assembly validation3
Transcriptome assembly3
Variant classification3
Calculation2
Copy number variation detection2
Differential gene expression profiling2
Genetic mapping2
Indel detection2
Modelling and simulation2
Prediction and recognition2
Protein interaction network prediction2
Scaffolding2
Sequence assembly visualisation2
SNP annotation2
SNP detection2
Weighted correlation network analysis2
Analysis1
Antimicrobial resistance prediction1
Classification1
Clustering1
Correlation1
Data handling1
Dimensionality reduction1
DNA barcoding1
Enrichment analysis1
Expression correlation analysis1
Filtering1
Format detection1
Gene expression profiling1
Gene functional annotation1
Genome alignment1
Genome analysis1
Genome comparison1
Genome visualisation1
ID mapping1
Image analysis1
Information retrieval1
Mapping1
Metabolic pathway prediction1
Named-entity and concept recognition1
Network analysis1
Operation1
Peptide identification1
Phasing1
Protein identification1
Protein-protein interaction analysis1
Relation extraction1
RNA-Seq analysis1
Sequence contamination filtering1
Sequence cutting1
Sequence trimming1
Text annotation1
Text mining1
Transcription factor binding site prediction1
Validation1
Visualisation1
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652
Workflows visible to you, out of a total of 697
Nascent Transcription Processing Pipeline
A Nanostring nCounter analysis pipeline
A pipeline to demultiplex, QC and map Nanopore data
MNase-seq analysis pipeline using BWA and DANPOS2.
Identify and quantify peptides from mass spectrometry raw data
Assembly and annotation of metatranscriptomic data, both prokaryotic and eukaryotic
Assembly, binning and annotation of metagenomes
Type: Nextflow
Creators: No author provided, Hadrien Gourlé, Daniel Straub, Sabrina Krakau
Submitter: WorkflowHub Bot
Deprecated
Compare DNA/RNA/protein sequences on k-mer content
Image Mass Cytometry analysis pipeline.