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834 Workflows visible to you, out of a total of 910
sanger-tol/curationpretext
Work-in-progress

sanger-tol/curationpretext

GitHub Actions CI Status GitHub Actions Linting Status[![Cite with ...

Type: Nextflow

Creators: Damon-Lee Pointon, Mahesh Panchel, Yumi Sims, Will Eagles, Matthieu Muffato, Solenne Correard, Josie Paris

Submitter: Damon-Lee Pointon

sanger-tol/curationpretext
Work-in-progress

sanger-tol/curationpretext sanger-tol/curationpretext

GitHub Actions CI Status GitHub Actions Linting Status[![Cite ...

Type: Nextflow

Creators: Damon-Lee Pointon, Mahesh Panchel

Submitter: Damon-Lee Pointon

ethos.REFLOW: Renewable Energy potentials workFLOW manager

REFLOW is a workflow manager tool designed to streamline and automate tasks related to renewable energy potential analyses. It is built with Luigi and provides an automated, robust framework for data acquisition, processing, land/sea eligibility analysis, technology placements, simulations and visualizations. It is build with transparency and reproducibility in mind.

Type: Python

Creators: None

Submitter: Tristan Pelser

Anti-Cancer potential of a new Derivative of Caffeic Acid Phenethyl Ester targeting the centrosome - DIA-NN data KNIME processing workflow

KNIME workflow describing the analysis of mass spectrometry dataset related to the publication "Anti-Cancer potential of a new Derivative of Caffeic Acid Phenethyl Ester targeting the centrosome". Workflow was built using the KNIME software container environment, version 4.1.3a, which can be created using "docker pull cfprot/knime:4.1.3a" command in Docker. Please consult Github pages for more information on how to use the ...

Type: KNIME

Creators: Katerina Hanakova, David Potesil

Submitter: David Potesil

DOI: 10.48546/workflowhub.workflow.1309.1

FAIR Statistics Aggregator for DOIs
Stable

Lin_X_NFDI4BIOIMAGE

FAIR Statistics Aggregator for DOIs

Table of Contents

  1. Introduction
  2. Features
  3. Requirements
  4. Installation
  5. Usage
  6. Output
  7. Limitations
  8. License

Introduction

This repository hosts a prototype tool designed to analyze and aggregate FAIR (Findable, Accessible, Interoperable, and Reusable) statistics for a list ...

Type: Python

Creators: None

Submitter: SaibotMagd magd

RDM_system_connector
Deprecated

Lin_X_NFDI4BIOIMAGE

RDM_system_connector

WARNING

This is a proof of concept, it has not been decided whether it will be developed into a fully functional tool. Feedback is therefore essential, especially as it is unclear whether this type of tool is useful at all, and if so, which parts, as the concept consists of many different parts. (source code readme:

Type: Python

Creators: None

Submitter: SaibotMagd magd

Galaxy Workflow for CNV Detection with CNVkit and Conversion to Beacon JSON Using cnv-vcf2json
Stable

This Galaxy workflow streamlines comprehensive copy number variation (CNV) analysis by integrating CNVkit’s robust detection capabilities with an efficient conversion step using cnv-vcf2json to format results into Beacon JSON. Designed for computational biologists and bioinformaticians, the workflow standardizes CNV identification and output formatting to enhance interoperability with Beacon networks. It is specifically optimized for use with mapped BAM files from the EGAD00001008392 synthetic ...

Type: Galaxy

Creators: Khaled Jum'ah, Krzysztof Poterlowicz

Submitter: Khaled Jum'ah

DOI: 10.48546/workflowhub.workflow.1314.1

nf-core/metatdenovo

GitHub Actions CI Status GitHub Actions Linting StatusAWS CI[![Cite ...

Type: Nextflow

Creators: Danilo Di Leo, Emelie Nilsson & Daniel Lundin

Submitter: WorkflowHub Bot

Use Case 4: Identify the Tissue Activity for a TF based on its Targets

The workflow starts with selecting KLF4 as the search term. Gene sets with set labels containing KLF4 were queried from Enrichr[1]. Identified matching terms from the ENCODE TF ChIP-seq 2015[2] library were assembled into a collection of gene sets. A GMT was extracted from the Enrichr results for ENCODE_TF_ChIP-seq_2015. Identified matching terms from the ChEA 2022[4] library were assembled into a collection of gene sets. A GMT was extracted from the Enrichr results for ChEA_2022. Identified ...

Type: Unrecognized workflow type

Creator: Playbook Partnership NIH CFDE

Submitter: Daniel Clarke

DOI: 10.48546/workflowhub.workflow.1239.2

Use Case 5: Small Molecules to Induce a Biological Process

The workflow starts with selecting Autophagy as the search term. Gene sets with set labels containing Autophagy were queried from Enrichr[1]. Identified matching terms from the MGI Mammalian Phenotype Level 4 2019[2] library were assembled into a collection of gene sets. A GMT was extracted from the Enrichr results for MGI_Mammalian_Phenotype_Level_4_2019. All the identified gene sets were combined using the union set operation. Reversers and mimickers from over 1 million signatures were identified ...

Type: Unrecognized workflow type

Creator: Playbook Partnership NIH CFDE

Submitter: Daniel Clarke

DOI: 10.48546/workflowhub.workflow.1240.2

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