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Workflow type
Snakemake1
Submitter
Hugo Lefeuvre1
Team
BiRD1
Space
Independent Teams1
Topic annotations
Metagenomics1
Operation annotations
Gene functional annotation1
Genome assembly1
Read binning1
Read mapping1
Sequence assembly1
Sequencing quality control1
Taxonomic classification1
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Stable1
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Stable
MAGNETO
MAGNETO is an automated snakemake workflow dedicated to MAG (Metagenome-Assembled Genomes) reconstruction from metagenomic data.
It includes a fully-automated coassembly step informed by optimal clustering of metagenomic distances, and implements complementary genome binning strategies, for improving MAG recovery.
Key Features
- Quality Control (QC): Automatically assesses the quality and the contamination of input reads, ensuring that low-quality data are filtered out to improve ...
Type: Snakemake
Creators: Samuel Chaffron, Audrey Bihouee, Benjamin Churcheward, Maxime Millet, Guillaume Fertin, Hugo Lefeuvre
Submitter: Hugo Lefeuvre
