Workflows

Quality control subworkflow for single-end reads.

Associated Tutorial

This workflows is part of the tutorial MGnify v5.0 Amplicon Pipeline, available in the GTN

Features

• Includes a Galaxy Workflow Report

Thanks to...

Workflow Author(s): ...

Download data from cBioPortal and prepare it for Flexynesis

Associated Tutorial

This workflows is part of the tutorial Prepare data from CbioPortal for Flexynesis integration, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes ...

This workflow performs step-by-step quantification of electrophoresis gel bands by processing QuPath-generated ROI files in Galaxy, automatically measuring band intensity and producing tabular results for visualization.

Associated Tutorial

This workflows is part of the tutorial Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools, ...

This workflow is generated from the GTN tutorial Whole transcriptome analysis of Arabidopsis thaliana (https://gxy.io/GTN:T00292).

Associated Tutorial

This workflows is part of the tutorial Whole transcriptome analysis of Arabidopsis thaliana, available in the GTN

Features

• Includes [Galaxy Workflow ...

Workflow for the GTN tutorial: "Hi-C analysis of Drosophila melanogaster cells using HiCExplorer".

Associated Tutorial

This workflows is part of the tutorial Hi-C analysis of Drosophila melanogaster cells using HiCExplorer, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Classification and visualization of SSU, LSU sequences.

Associated Tutorial

This workflows is part of the tutorial MGnify v5.0 Amplicon Pipeline, available in the GTN

Features

• Includes a Galaxy Workflow Report
• Uses ...

YOLO based tail analysis workflow for image segmentation and detection. The workflow is based on https://git.embl.org/grp-cba/tail-analysis/-/blob/main/analysis_workflow.md

Associated Tutorial

This workflows is part of the tutorial Training Custom YOLO Models for Object Detection and Segmentation in Bioimages, available in the GTN

...

From Obis data to Biodiversity indicators

Associated Tutorial

This workflows is part of the tutorial Obis marine indicators, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Marie Jossé

Tutorial Author(s): ...

Secondary metabolite biosynthetic gene cluster (SMBGC) Annotation using Neural Networks Trained on Interpro Signatures

Associated Tutorial

This workflows is part of the tutorial Marine Omics identifying biosynthetic gene clusters, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Associated Tutorial

This workflows is part of the tutorial From NDVI data with OpenEO to time series visualisation with Holoviews, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Marie Jossé

**Tutorial ...