Workflows

Analyse HeLa fluorescence siRNA screen

Associated Tutorial

This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Uses ...

Associated Tutorial

This workflows is part of the tutorial Scanpy Parameter Iterator, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Julia Jakiela

Tutorial Author(s): [Julia ...

Single-cell quality control with scater

Associated Tutorial

This workflows is part of the tutorial Single-cell quality control with scater, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Associated Tutorial

This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Till Korten, Leonid Kostrykin

Tutorial Author(s): ...

Associated Tutorial

This workflows is part of the tutorial Understanding Barcodes, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a Galaxy Workflow Report ...

Genome annotation with Maker

Associated Tutorial

This workflows is part of the tutorial Genome annotation with Maker, available in the GTN

Thanks to...

Workflow Author(s): Anthony Bretaudeau, French National Institute for Agriculture, Food, and Environment (INRAE)

Tutorial Author(s): [Anthony ...

Nucleoli segmentation and feature extraction using CellProfiler

Associated Tutorial

This workflows is part of the tutorial Nucleoli segmentation and feature extraction using CellProfiler, available in the GTN

Thanks to...

Tutorial Author(s): Beatriz Serrano-Solano, ...

example cellprofiler pipeline

Associated Tutorial

This workflows is part of the tutorial Object tracking using CellProfiler, available in the GTN

Thanks to...

Tutorial Author(s): Yi Sun, [Beatriz ...

Workflow for this training: https://training.galaxyproject.org/training-material/topics/single-cell/tutorials/scrna-case_basic-pipeline/tutorial.html

Associated Tutorial

This workflows is part of the tutorial Filter, plot and explore single-cell RNA-seq data with Scanpy, available in the GTN

Features

• Includes [Galaxy Workflow ...

This workflow is developed for automatic detection and measuring of mitoflashes in time-lapse microscopy images.

In addition, this workflow can be used for detection and tracking of other spot-like organelles with small motion.

If this workflow helped with the analysis of your data, please do not forget to cite: https://doi.org/10.1097/j.pain.0000000000002642

Associated Tutorial

This workflows is part of the tutorial [Tracking of mitochondria and capturing ...