Teams

ColoPola dataset is Colorectal cancer Polarimetric images dataset

Polarimetric imaging is increasingly used in biological research, such as tissue characterization and cancer detection. To support classification models, this study introduces ColoPola, a publicly available colorectal cancer polarimetric image dataset (288 healthy, 284 malignant), each with 36 images for different polarization states - totaling 20,592 images. Five classification models (CNN, CNN_2, EfficientFormerV2, DenseNet, ...

The Common Workflow Language (CWL) is an open standard for describing analysis workflows and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments. CWL is designed to meet the needs of data-intensive science, such as Bioinformatics, Medical Imaging, Astronomy, High Energy Physics, and Machine Learning.CWL is developed by a multi-vendor working group consisting ...

Team created to publish applications during COMPSs Tutorials, and share them among participants.

Computational Science at Helmholtz-Zentrum Dresden-Rossendorf (HZDR)

Nextflow pipelines for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

Research team concerned with Connectome-based Predictive Modeling (CPM).

The CRC Cohort is a collection of clinical data and digital high-resolution digital pathology images pertaining to tumor cases. The collection has been assembled from a number of participating biobanks and other partners through the ADOPT BBMRI-ERIC project.