Genomes Generation Pipeline

MGnify genomes generation pipeline (GGP) produces prokaryotic and eukaryotic MAGs from raw reads and corresponding assemblies.

This pipeline does not support co-binning.

Pipeline summary

The pipeline performs the following tasks:

• Supports short reads.
• Changes read headers to their corresponding assembly accessions (in the ERZ namespace).
• Quality trims the reads, removes adapters fastp.

Afterward, the pipeline:

• Runs a ...