3 items tagged with 'long-reads'.
Work-in-progress
Workflow for quality assessment and taxonomic classification of amplicon long read sequences. In addition files are exported to their respective subfolders for easier data management in a later stage.
Inputs are expected to be basecalled fastq files
Steps:
- NanoPlot read quality control, before and after filtering
- fastplong read quality and length filtering
- Emu abundance; species-level taxonomic abundance for full-length 16S read
Type: Nextflow
Creators: James A. Fellows Yates, Sofia Stamouli, Moritz E. Beber, Lauri Mesilaakso, Thomas A. Christensen II, Jianhong Ou, Mahwash Jamy, Maxime Borry, Rafal Stepien, Tanja Normark
Submitter: WorkflowHub Bot
