RepeatMasker
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Run on GalaxyMasking repeats in a genome using RepeatMasker
Associated Tutorial
This workflows is part of the tutorial Masking repeats with RepeatMasker, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Anthony Bretaudeau
Tutorial Author(s): Anthony Bretaudeau, Alexandre Cormier, Laura Leroi, Erwan Corre, Stéphanie Robin, Jonathan Kreplak
Tutorial Contributor(s): Helena Rasche, Cristóbal Gallardo, Anthony Bretaudeau, Laura Leroi, Björn Grüning, Jonathan Kreplak, Saskia Hiltemann, Stéphanie Robin, Simon Bray, Bérénice Batut
Grants(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health, EuroScienceGateway
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Raw genome sequence | #main/Raw genome sequence | The raw (not masked) genome sequence in fasta format |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Red | toolshed.g2.bx.psu.edu/repos/iuc/red/red/2018.09.10+galaxy1 |
| 2 | RepeatMasker | toolshed.g2.bx.psu.edu/repos/bgruening/repeat_masker/repeatmasker_wrapper/4.1.5+galaxy0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| RepeatMasker masked sequence on input dataset(s) | #main/RepeatMasker masked sequence on input dataset(s) | n/a |
|
| RepeatMasker output log on input dataset(s) | #main/RepeatMasker output log on input dataset(s) | n/a |
|
| RepeatMasker repeat catalogue on input dataset(s) | #main/RepeatMasker repeat catalogue on input dataset(s) | n/a |
|
| RepeatMasker repeat statistics on input dataset(s) | #main/RepeatMasker repeat statistics on input dataset(s) | n/a |
|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
Version History
Version 2 (latest) Created 28th Jul 2025 at 13:09 by Armin Dadras
Updated the authors list.
Frozen
Version-2e8da6cc
1.0 (earliest) Created 2nd Jun 2025 at 10:57 by GTN Bot
Updated the authors section.
Frozen
1.0
e8da6cc
Creators and Submitter
Views: 592 Downloads: 86 Runs: 0
Created: 2nd Jun 2025 at 10:57
Last updated: 28th Jul 2025 at 10:57
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