Alignment RNA v2.0
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The workflow main goal is to align RNA-Seq read files with STAR and to check for duplicates using either Picard Markduplicates or UMI-tools. Finally it runs Multi QC to gather tool metrics. The workflow was designed to be run in the SeqUIa (http://cfb.ceitec.muni.cz/sequia) application.
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v2.0 (earliest) Created 19th Sep 2025 at 08:51 by Nicolas Blavet
Change processed_fastq to input directory and add mapped
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v2.0d9da598
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Created: 19th Sep 2025 at 08:51
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https://orcid.org/0000-0003-2199-9119
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Teams: Bioinformatics Core CEITEC
Web page: https://www.ceitec.eu/bioinformatics-core-facility/cf284
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Space: Bioinformatics Core CEITEC
Public web page: https://www.ceitec.eu/bioinformatics-core-facility/cf284
