nf-core/rnaseq
3.1

3.20.0 (latest)

3.19.0

3.18.0

3.17.0

3.16.1

3.16.0

3.15.1

3.15.0

3.14.0

3.13.2

3.13.0

3.13.1

3.12.0

3.11.2

3.11.1

3.11.0

3.10.1

3.10

3.9

3.8.1

3.8

3.7

3.6

3.5

3.4

3.3

3.2

3.1

3.0

2.0

1.4.2

1.4.1

1.4

1.3

1.2

1.1

1.0 (earliest)

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Workflow Type: Nextflow

Stable

Nextflow RNA-Seq analysis pipeline, part of the nf-core community.

SEEK ID: https://workflowhub.eu/workflows/44?version=10

Version History

3.20.0 (latest) Created 3rd Sep 2025 at 03:04 by WorkflowHub Bot

Updated to 3.20.0

Frozen 3.20.0 b971ba1

3.19.0 Created 11th Jun 2025 at 03:06 by WorkflowHub Bot

Updated to 3.19.0

Frozen 3.19.0 0bb032c

3.18.0 Created 21st Dec 2024 at 04:05 by WorkflowHub Bot

Updated to 3.18.0

Frozen 3.18.0 b96a753

3.17.0 Created 25th Oct 2024 at 04:03 by WorkflowHub Bot

Updated to 3.17.0

Frozen 3.17.0 00f924c

3.16.1 Created 17th Oct 2024 at 04:03 by WorkflowHub Bot

Updated to 3.16.1

Frozen 3.16.1 1f3f64d

3.16.0 Created 3rd Oct 2024 at 04:03 by WorkflowHub Bot

Updated to 3.16.0

Frozen 3.16.0 33df0c0

3.15.1 Created 17th Sep 2024 at 04:03 by WorkflowHub Bot

Updated to 3.15.1

Frozen 3.15.1 4053b2e

3.15.0 Created 6th Sep 2024 at 04:03 by WorkflowHub Bot

Updated to 3.15.0

Frozen 3.15.0 4e34945

3.14.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.14.0

Frozen 3.14.0 b89fac3

3.13.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.13.2

Frozen 3.13.2 a10f41a

3.13.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.13.0

Frozen 3.13.0 14f9d26

3.13.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.13.1

Frozen 3.13.1 b59e87a

3.12.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.12.0

Frozen 3.12.0 3bec233

3.11.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.11.2

Frozen 3.11.2 5671b65

3.11.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.11.1

Frozen 3.11.1 287afcf

3.11.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.11.0

Frozen 3.11.0 48fb9b4

3.10.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.10.1

Frozen 3.10.1 6e1e448

3.10 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.10

Frozen 3.10 adce7ce

3.9 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.9

Frozen 3.9 e049f51

3.8.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.8.1

Frozen 3.8.1 89bf536

3.8 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.8

Frozen 3.8 6995330

3.7 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.7

Frozen 3.7 e0dfce9

3.6 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.6

Frozen 3.6 7106bd7

3.5 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.5

Frozen 3.5 646723c

3.4 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.4

Frozen 3.4 964425e

3.3 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.3

Frozen 3.3 8094c42

3.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.2

Frozen 3.2 b3ff92b

3.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.1

Frozen 3.1 0fcbb0a

3.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 3.0

Frozen 3.0 3643a94

2.0 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 2.0

Frozen 2.0 bc5fc76

1.4.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.4.2

Frozen 1.4.2 3b6df9b

1.4.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.4.1

Frozen 1.4.1 f213557

1.4 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.4

Frozen 1.4 55eee0c

1.3 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.3

Frozen 1.3 37f260d

1.2 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.2

Frozen 1.2 e837637

1.1 Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.1

Frozen 1.1 1cd5ab7

1.0 (earliest) Created 11th Jun 2024 at 13:55 by WorkflowHub Bot

Updated to 1.0

Frozen 1.0 44f1525

Creators and Submitter

Creators

Harshil Patel
Phil Ewels
Rickard Hammarén

Submitter

WorkflowHub Bot

Discussion Channels

Documentation

nf-core Slack channel

License

MIT License

Activity

Views: 24988 Downloads: 13223

Created: 22nd Jul 2020 at 11:58

Last updated: 3rd Sep 2025 at 03:04

nf-core/rnaseq 3.1 3.20.0 (latest) 3.19.0 3.18.0 3.17.0 3.16.1 3.16.0 3.15.1 3.15.0 3.14.0 3.13.2 3.13.0 3.13.1 3.12.0 3.11.2 3.11.1 3.11.0 3.10.1 3.10 3.9 3.8.1 3.8 3.7 3.6 3.5 3.4 3.3 3.2 3.1 3.0 2.0 1.4.2 1.4.1 1.4 1.3 1.2 1.1 1.0 (earliest)