Workflows
What is a Workflow?Filters
KNIME workflow describing the analysis of mass spectrometry dataset related to the publication "Proximity interactomics identifies RAI14, EPHA2 and PHACTR4 as essential components of Wnt/planar cell polarity pathway in vertebrates". Workflow was built using the KNIME software container environment, version 4.7.7a, which can be created using "docker pull cfprot/knime:4.7.7a" command in Docker. The input data for the KNIME workflow (the report.tsv from DIA-NN) can be found on PRIDE repository under ...
Stratum corneum nanotexture feature detection using deep learning and spatial analysis: a non-invasive tool for skin barrier assessment
This repository presents an objective, quantifiable method for assessing atopic dermatitis (AD) severity. The program integrates deep learning object detection with spatial analysis algorithms to accurately calculate the density of circular nano-size objects (CNOs), termed the Effective Corneocyte Topographical Index (ECTI). The ECTI demonstrates remarkable ...
EuCanImage FHIR ETL Implementation
This repository contains the ETL implementation for EuCanImage, encouraging semantic interoperability of the clinical data obtained in the studies by transforming it into a machine-readable format following FHIR standards. This parser uses FHIR Resources in order to create the dictionaries following a FHIR compliant structure.
- Code Language is written in Python 3.11. ...
EuCanImage FHIR ETL Implementation
This repository contains the ETL implementation for EuCanImage, encouraging semantic interoperability of the clinical data obtained in the studies by transforming it into a machine-readable format following FHIR standards. This parser uses FHIR Resources in order to create the dictionaries following a FHIR compliant structure.
- Code Language is written in Python 3.11. ...
Type: Python
Creators: Aldar Cabrelles, Based on FHIR Resources made by NazrulWorld on GitHub (https://github.com/nazrulworld/)
Submitter: Aldar Cabrelles
EuCanImage FHIR ETL Implementation
This repository contains the ETL implementation for EuCanImage, encouraging semantic interoperability of the clinical data obtained in the studies by transforming it into a machine-readable format following FHIR standards. This parser uses FHIR Resources in order to create the dictionaries following a FHIR compliant structure.
- Code Language is written in Python 3.11. ...
Type: Python
Creators: Aldar Cabrelles, Based on FHIR Resources made by NazrulWorld on GitHub (https://github.com/nazrulworld/)
Submitter: Aldar Cabrelles
EuCanImage FHIR ETL Implementation
This repository contains the ETL implementation for EuCanImage, encouraging semantic interoperability of the clinical data obtained in the studies by transforming it into a machine-readable format following FHIR standards. This parser uses FHIR Resources in order to create the dictionaries following a FHIR compliant structure.
- Code Language is written in Python 3.11. ...
Type: Python
Creators: Aldar Cabrelles, Based on FHIR Resources made by NazrulWorld on GitHub (https://github.com/nazrulworld/)
Submitter: Aldar Cabrelles
EuCanImage FHIR ETL Implementation
This repository contains the ETL implementation for EuCanImage, encouraging semantic interoperability of the clinical data obtained in the studies by transforming it into a machine-readable format following FHIR standards. This parser uses FHIR Resources in order to create the dictionaries following a FHIR compliant structure.
- Code Language is written in Python 3.11. ...
Type: Python
Creators: Aldar Cabrelles, https://github.com/EGA-archive/EuCanImage-FHIR
Submitter: Aldar Cabrelles
Name: PhysioNet kNN Kfold Contact Person: support-compss@bsc.es Access Level: public License Agreement: Apache2 Platform: COMPSs Machine: MareNostrum5
Kfold to evaluate kNN accuracy on PhysioNet dataset (https://b2drop.bsc.es/index.php/s/8Q8MefXX2rrzaWs). This application used dislib-0.9.0
With this galaxy pipeline you can use Salmonella sp. next generation sequencing results to predict bacterial AMR phenotypes and compare the results against gold standard Salmonella sp. phenotypes obtained from food.
This pipeline is based on the work of the National Food Agency of Canada. Doi: 10.3389/fmicb.2020.00549
| tool | version | license |
|---|---|---|
| SeqSero2 | 1.2.1 | GNU GPL v2.0 |
| ... |
| database | database version |
|---|---|
| ResFinder | 2022-07-19 |
| CARD | 2023-12-03 |