Workflows
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Name: Matrix multiplication with Files, reproducibility example Contact Person: support-compss@bsc.es Access Level: public License Agreement: Apache2 Platform: COMPSs
Description
Matrix multiplication is a binary operation that takes a pair of matrices and produces another matrix.
If A is an n×m matrix and B is an m×p matrix, the result AB of their multiplication is an n×p matrix defined only if the number of columns m in A is equal to the number of rows m in B. When multiplying ...
ProGFASTAGen
The ProGFASTAGen (Protein-Graph-FASTA-Generator or ProtGraph-FASTA-Generator) repository contains workflows to generate so-called precursor-specific-FASTAs (using the precursors from MGF-files) including feature-peptides, like VARIANTs or CONFLICTs if desired, or global-FASTAs (as described in ProtGraph). The single workflow scripts have been implemented with Nextflow-DSL-2 ...
Parabricks-Genomics-nf is a GPU-enabled pipeline for alignment and germline short variant calling for short read sequencing data. The pipeline utilises NVIDIA's Clara Parabricks toolkit to dramatically speed up the execution of best practice bioinformatics tools. Currently, this pipeline is configured specifically for NCI's Gadi HPC.
NVIDIA's Clara Parabricks can deliver a significant ...
Library curation BOLD
This repository contains scripts and synonymy data for pipelining the automated curation of BOLD data dumps in BCDM TSV ...
Type: Snakemake
Creators: Rutger Vos, Fabian Deister, Ben Price, Special thanks to Sujeevan Ratnasingham and the team at CBG for the creation of the BCDM data exchange format that this pipeline operates on
Submitter: Rutger Vos
The input to this workflow is a data matrix of gene expression that was collected from a pediatric patient tumor patient from the KidsFirst Common Fund program [1]. The RNA-seq samples are the columns of the matrix, and the rows are the raw expression gene count for all human coding genes (Table 1). This data matrix is fed into TargetRanger [2] to screen for targets which are highly expressed in the tumor but lowly expressed across most healthy human tissues based on gene expression data collected ...
This workflow provides a calculaiton of the power spectrum of Stochastic Gravitational Wave Backgorund (SGWB) from a first-order cosmological phase transition based on the parameterisations of Roper Pol et al. (2023). The power spectrum includes two components: from the sound waves excited by collisions of bubbles of the new phase and from the turbulence that is induced by these collisions.
The cosmological epoch of the phase transition is described by the temperature, T_star and by the number(s) ...
Name: Incrementation and Fibonacci Access Level: public License Agreement: Apache2 Platform: COMPSs
Description
Brief Overview: Demonstrates COMPSs task parallelism with increment and Fibonacci computations. Helps to understand COMPSs.
Detailed Description:
- Performs multiple increments of input values in parallel using COMPSs.
- Concurrently calculates Fibonacci numbers using recursive COMPSs tasks.
- Demonstrates task synchronization via
compss_wait_on
.
Execution
...
Type: COMPSs
Creators: Ashish Bhawel, Ashish Bhawel, Uploading this Workflow under the guidance of Raül Sirvent.
Submitter: Ashish Bhawel
The tool provides a calculation of the power spectrum of Stochastic Gravitational Wave Backgorund (SGWB) from a first-order cosmological phase transition based on the parameterisations of Roper Pol et al. (2023). The power spectrum includes two components: from the sound waves excited by collisions of bubbles of the new phase and from the turbulence that is induced by these collisions.
The cosmological epoch of the phase transition is described by the temperature, T_star and by the number(s) of ...
Type: Galaxy
Creators: Andrii Neronov, Théo Boyer, Denys Savchenko, Volodymyr Savchenko
Submitter: Denys Savchenko