Workflows

What is a Workflow?
1293 Workflows visible to you, out of a total of 1376
Stable

Description

The Settlement Delineation and Analysis (SDA) workflows generates a settlement network from geospatial settlement data. It can process geotiff and shapefile inputs and was originally designed to operate on the World Settlement Footprint dataset. Through multiple workflow stages, a settlement network is constructed, contracted (i.e. clustered) and ultimately analysed with centrality measures. The output shapefile stores the ...

Type: Docker

Creator: Lorenz Gruber

Submitter: Lorenz Gruber

DOI: 10.48546/workflowhub.workflow.1308.2

Metatranscriptomics analysis using microbiome RNA-seq data (short)

Associated Tutorial

This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data (short), available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Work-in-progress

DT-GEO DTC61 WF6101

This repository contains a Common Workflow Language (CWL) and Ro-Crate metadata definition for DTC-T1 workflow 6101, which is designed for providing tsunami impact forecasting following a tsunamigenic earthquake event, based on a probabilistic approach. The workflow integrates real-time earthquake data, runs HPC simulations, and generates tsunami hazard maps.

The main CWL implementation is found in WF6101.cwl, together with ST610106 and ST610109 describing complex steps. The ...

Type: Common Workflow Language

Creator: Marco Salvi

Submitters: Raül Sirvent, Pablo Orviz

Stable

Code and supporting data for the article: "Exploring the role of normalization and feature selection in microbiome disease classification pipelines."

The repository contains the following folders:

  • 1. data: contains OTU/ASV tables and class annotations for the 15 curated datasets considered.
  • 2. src: code writen to perform the analyses from the article and the statistical tests
  • 3. results: tables containing global nested cross validation results
  • 4. figures

License: This

...

Work-in-progress

plant2human workflow

GitHub last commit (branch) Status cwltool License Version ...

Type: Common Workflow Language

Creator: Sora Yonezawa

Submitter: Sora Yonezawa

DOI: 10.48546/workflowhub.workflow.1206.6

Stable

Galaxy workflow for the reproduction of the results published in: Panchal, Monik, Callison, June, Skukauskas, Vainius, Gianolio, Diego, Cibin, Giannantonio, York, Andrew P E, Schuster, Manfred E, Hyde, Timothy I, Collier, Paul, Catlow, C Richard A, Gibson, Emma K (2021) Operando XAFS investigation on the effect of ash deposition on three-way catalyst used in gasoline particulate filters and the effect of the manufacturing process on the catalytic activity DOI: 10.1088/1361-648x/abfe16.

This ...

Stable

Galaxy workflow for the reproduction of the results published in: R. H. Blackmore, M. E. Rivas, G. F. Tierney, K. M. H. .Mohammed, D. Decarolis, S. Hayama, F. Venturini, G. Held, R. Arrigo, M. Amboage, P. Hellier, E. W. Lynch, M. Amri, M. Casavola, T. Eralp Erden, P. Collier, P. P. Wells (2020) The electronic structure, surface properties, and in situ N2O decomposition of mechanochemically synthesised LaMnO3 DOI: 10.1039/d0cp00793e.

This workflow is published as part of the research data submitted ...

Stable

Galaxy workflow for the reproduction of the results published in: S. K. Matam, C. Moffat, P. Hellier, M. Bowker, I. P. Silverwood, C. R. A. .Catlow, S. D. Jackson, J. Craswell, P. P. Wells, S. F. Parker, E. K. Gibson (2021). Investigation of MoOx/Al2O3 under Cyclic Operation for Oxidative and Non-Oxidative Dehydrogenation of Propane DOI: 10.3390/catal10121370.

This workflow is published as part of the research data submitted for the paper Facilitating Reproducibility in Catalysis Research with ...

Stable

Galaxy workflow for the reproduction of the results published in: D. Decarolis, A. H. Clark, T. Pellegrinelli, M. Nachtegaal, E. W. Lynch, C. R. A. .Catlow, E. K. Gibson, A. Goguet, P. P. Wells (2021). Spatial Profiling of a Pd/Al2O3 Catalyst during Selective Ammonia Oxidation DOI: 10.1021/acscatal.0c05356.

This workflow is published as part of the research data submitted for the paper Facilitating Reproducibility in Catalysis Research with Managed Workflows and RO-Crates: A Galaxy Case Study, ...

Stable

Galaxy workflow for the reproduction of the results published in: R. H. Blackmore, M. E. Rivas, T. Eralp Erden, T. Dung Tran, H. R. Marchbank, D. Ozkaya, M. Briceno de Gutierrez, A. Wagland, P. Collier, P. P. Wells (2018). Understanding the mechanochemical synthesis of the perovskite LaMnO3 and its catalytic behaviour DOI: 10.1039/C9DT03590G.

This workflow is published as part of the research data submitted for the paper Facilitating Reproducibility in Catalysis Research with Managed Workflows ...

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